{
  "_id": "6a185d3eacfb0bcc41dbc424",
  "Package": "cascade",
  "Title": "Contextualizing untargeted Annotation with Semi-quantitative\nCharged Aerosol Detection for pertinent characterization of\nnatural Extracts",
  "Version": "0.0.0.9002",
  "Authors@R": "c(\nperson(given = \"Adriano\",\nfamily = \"Rutz\",\nemail = \"adafede@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0443-9902\"))\n)",
  "Maintainer": "Adriano Rutz <adafede@gmail.com>",
  "Description": "This package provides the infrastructure to perform\nAutomated Composition Assessment of Natural Extracts.",
  "License": "AGPL (>= 3)",
  "URL": "https://github.com/adafede/cascade,\nhttps://adafede.github.io/cascade",
  "BugReports": "https://github.com/adafede/cascade/issues",
  "Remotes": [
    "taxonomicallyinformedannotation/tima"
  ],
  "ByteCompile": "TRUE",
  "Collate": "'normalize_chromatograms_list.R' 'add_chromato_line.R'\n'baseline_chromatogram.R' 'cascade-package.R'\n'change_intensity_name.R' 'check_chromatograms.R'\n'load_chromatograms.R' 'deriv.R' 'middle_pts.R' 'second_der.R'\n'signal_sharpening.R' 'filter_fft.R' 'improve_signal.R'\n'extract_chromatogram.R' 'check_chromatograms_alignment.R'\n'check_export_dir.R' 'prepare_rt.R' 'prepare_peaks.R'\n'prepare_mz.R' 'get_peaks.R' 'peaks_progress.R'\n'normalize_chromato.R' 'join_peaks.R' 'preprocess_peaks.R'\n'improve_signals_progress.R' 'preprocess_chromatograms.R'\n'prepare_features.R' 'plot_peak_detection.R' 'load_name.R'\n'load_features.R' 'check_peaks_integration.R' 'colors.R'\n'compare_peaks.R' 'correct_acn.R' 'extract_ms_peak.R'\n'extract_ms_progress.R' 'format_gt.R' 'wiki_progress.R'\n'treemaps_progress.R' 'taxon_name_to_qid.R' 'tables_progress.R'\n'queries_progress.R' 'prepare_plot.R' 'prepare_hierarchy.R'\n'plot_histograms.R' 'make_no_stereo.R'\n'make_chromatographiable.R' 'hierarchies_grouped_progress.R'\n'hierarchies_progress.R' 'generate_ids.R'\n'prepare_comparison.R' 'no_other.R' 'make_other.R'\n'plot_results.R' 'make_confident.R' 'y_as_na.R'\n'keep_best_candidates.R' 'generate_pseudochromatograms.R'\n'molinfo.R' 'load_features_informed.R' 'load_annotations.R'\n'generate_tables.R' 'globals.R' 'histograms_progress.R'\n'load_features_not_informed.R' 'load_ms_data.R'\n'plot_chromatogram.R' 'plot_tima.R' 'prehistograms_progress.R'\n'prepare_tima_annotations.R' 'transform_ms.R'\n'process_compare_peaks.R' 'query_wikidata.R'\n'save_histograms_progress.R' 'save_treemaps_progress.R'",
  "Config/roxygen2/markdown": "TRUE",
  "Config/roxygen2/version": "8.0.0",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "VignetteBuilder": "quarto",
  "biocViews": "metaboliteAnnotation, chargedAerosolDetector,\nsemiQuantitative, naturalProducts, computationalMetabolomics,\nspecializedMetabolome",
  "Config/pak/sysreqs": "cmake libglpk-dev make libarchive-dev libicu-dev\nlibpng-dev libuv1-dev libxml2-dev libnetcdf-dev libssl-dev\npython3 libnode-dev zlib1g-dev",
  "Repository": "https://adafede.r-universe.dev",
  "Date/Publication": "2026-05-28 14:27:46 UTC",
  "RemoteUrl": "https://github.com/adafede/cascade",
  "RemoteRef": "main",
  "RemoteSha": "21c930ef7057f001f9cf235a38d94cfe86645171",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 14:50:24 UTC",
    "User": "root"
  },
  "Author": "Adriano Rutz [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0443-9902>)",
  "MD5sum": "496f57d025cc55ca7b44c382357193b8",
  "_user": "adafede",
  "_type": "src",
  "_file": "cascade_0.0.0.9002.tar.gz",
  "_fileid": "de68904a3264c356ebb06cef5cc57fce34586211adae888acb1dc2ec5a87dc97",
  "_filesize": 68808684,
  "_sha256": "de68904a3264c356ebb06cef5cc57fce34586211adae888acb1dc2ec5a87dc97",
  "_created": "2026-05-28T14:50:24.000Z",
  "_published": "2026-05-28T15:20:30.061Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78318528039,
      "time": 227,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7269239074"
    },
    {
      "job": 78318528149,
      "time": 238,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7269244150"
    },
    {
      "job": 78318528032,
      "time": 221,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7269817771"
    },
    {
      "job": 78318528091,
      "time": 270,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7269854275"
    },
    {
      "job": 78317009135,
      "time": 356,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7269109078"
    },
    {
      "job": 78318528034,
      "time": 227,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7269238601"
    },
    {
      "job": 78318528075,
      "time": 243,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7269239671"
    },
    {
      "job": 78318528070,
      "time": 305,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7269282530"
    },
    {
      "job": 78318528114,
      "time": 239,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7269241356"
    }
  ],
  "_buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/adafede/cascade",
  "_commit": {
    "id": "21c930ef7057f001f9cf235a38d94cfe86645171",
    "author": "Adriano Rutz <adriano.rutz@hotmail.com>",
    "committer": "Adriano Rutz <adriano.rutz@hotmail.com>",
    "message": "style: air\n",
    "time": 1779978466
  },
  "_maintainer": {
    "name": "Adriano Rutz",
    "email": "adafede@gmail.com",
    "login": "adafede",
    "mastodon": "@adafede@mastodon.online",
    "linkedin": "in/adrianorutz",
    "orcid": "0000-0003-0443-9902",
    "description": "Pharmaceutical Scientist | Computational Metabolomics",
    "uuid": 44283913
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "baseline",
      "version": ">= 1.3.7",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "version": ">= 1.44.0",
      "role": "Imports"
    },
    {
      "package": "caTools",
      "version": ">= 1.18.3",
      "role": "Imports"
    },
    {
      "package": "curl",
      "version": ">= 7.1.0",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "version": ">= 1.18.4",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "version": ">= 1.0.1",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 4.0.3",
      "role": "Imports"
    },
    {
      "package": "gt",
      "version": ">= 1.3.0",
      "role": "Imports"
    },
    {
      "package": "htmltools",
      "version": ">= 0.5.9",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "version": ">= 1.2.2",
      "role": "Imports"
    },
    {
      "package": "MSnbase",
      "version": ">= 2.36.0",
      "role": "Imports"
    },
    {
      "package": "mzR",
      "version": ">= 2.44.0",
      "role": "Imports"
    },
    {
      "package": "plotly",
      "version": ">= 4.12.0",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "version": ">= 1.2.2",
      "role": "Imports"
    },
    {
      "package": "R.utils",
      "version": ">= 2.13.0",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "version": ">= 1.8.7",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "version": ">= 3.3.1",
      "role": "Imports"
    },
    {
      "package": "tidytable",
      "version": ">= 0.11.2",
      "role": "Imports"
    },
    {
      "package": "tima",
      "version": ">= 2.13.0",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "altdoc",
      "version": ">= 0.7.2",
      "role": "Suggests"
    },
    {
      "package": "BiocManager",
      "version": ">= 1.30.27",
      "role": "Suggests"
    },
    {
      "package": "BiocVersion",
      "version": ">= 3.22.0",
      "role": "Suggests"
    },
    {
      "package": "grateful",
      "version": ">= 0.3.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "version": ">= 1.51",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "version": ">= 1.5.1",
      "role": "Suggests"
    },
    {
      "package": "lifecycle",
      "version": ">= 1.0.5",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "svglite",
      "version": ">= 2.2.2",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.3.2",
      "role": "Suggests"
    }
  ],
  "_owner": "adafede",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-25",
      "n": 1
    },
    {
      "week": "2025-26",
      "n": 6
    },
    {
      "week": "2025-27",
      "n": 12
    },
    {
      "week": "2025-28",
      "n": 12
    },
    {
      "week": "2025-30",
      "n": 2
    },
    {
      "week": "2025-31",
      "n": 4
    },
    {
      "week": "2025-32",
      "n": 2
    },
    {
      "week": "2025-33",
      "n": 2
    },
    {
      "week": "2025-34",
      "n": 7
    },
    {
      "week": "2025-37",
      "n": 2
    },
    {
      "week": "2025-39",
      "n": 4
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2025-45",
      "n": 4
    },
    {
      "week": "2025-46",
      "n": 4
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2025-49",
      "n": 2
    },
    {
      "week": "2025-50",
      "n": 1
    },
    {
      "week": "2025-51",
      "n": 1
    },
    {
      "week": "2026-01",
      "n": 4
    },
    {
      "week": "2026-06",
      "n": 5
    },
    {
      "week": "2026-07",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-15",
      "n": 6
    },
    {
      "week": "2026-18",
      "n": 3
    },
    {
      "week": "2026-19",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 3
    },
    {
      "week": "2026-22",
      "n": 8
    }
  ],
  "_tags": [],
  "_topics": [
    "metaboliteannotation",
    "chargedaerosoldetector",
    "semiquantitative",
    "naturalproducts",
    "computationalmetabolomics",
    "specializedmetabolome",
    "charged-aerosol-detector",
    "chemical-composition",
    "lc-msms",
    "metabolite-annotation",
    "metabolomics",
    "natural-extracts",
    "natural-products",
    "quarto"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "adafede",
      "count": 516,
      "uuid": 44283913
    },
    {
      "user": "renovate-bot",
      "count": 2,
      "uuid": 25180681
    },
    {
      "user": "imgbotapp",
      "count": 1,
      "uuid": 31427850
    }
  ],
  "_userbio": {
    "uuid": 44283913,
    "type": "user",
    "name": "Adriano Rutz",
    "description": "Pharmaceutical Scientist | Computational Metabolomics"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cascade"
  },
  "_devurl": "https://github.com/adafede/cascade",
  "_pkgdown": "https://adafede.github.io/cascade",
  "_searchresults": 58,
  "_quarto": true,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/cascade.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "check_chromatograms_alignment",
    "check_peaks_integration",
    "generate_ids",
    "generate_pseudochromatograms",
    "generate_tables",
    "plot_tima",
    "prepare_tima_annotations",
    "process_compare_peaks",
    "query_wikidata",
    "taxon_name_to_qid"
  ],
  "_help": [
    {
      "page": "add_chromato_line",
      "title": "Add chromato line",
      "topics": [
        "add_chromato_line"
      ]
    },
    {
      "page": "baseline_chromatogram",
      "title": "Baseline chromatogram",
      "topics": [
        "baseline_chromatogram"
      ]
    },
    {
      "page": "change_intensity_name",
      "title": "Change intensity name",
      "topics": [
        "change_intensity_name"
      ]
    },
    {
      "page": "check_chromatograms",
      "title": "Check chromatograms",
      "topics": [
        "check_chromatograms"
      ]
    },
    {
      "page": "check_chromatograms_alignment",
      "title": "Check chromatograms alignment",
      "topics": [
        "check_chromatograms_alignment"
      ]
    },
    {
      "page": "check_export_dir",
      "title": "Check export dir",
      "topics": [
        "check_export_dir"
      ]
    },
    {
      "page": "check_peaks_integration",
      "title": "Check chromatograms alignment",
      "topics": [
        "check_peaks_integration"
      ]
    },
    {
      "page": "compare_peaks",
      "title": "Compare peaks",
      "topics": [
        "compare_peaks"
      ]
    },
    {
      "page": "deriv",
      "title": "Deriv",
      "topics": [
        "deriv"
      ]
    },
    {
      "page": "extract_chromatogram",
      "title": "Extract chromatogram",
      "topics": [
        "extract_chromatogram"
      ]
    },
    {
      "page": "extract_ms_peak",
      "title": "Extract MS peak",
      "topics": [
        "extract_ms_peak"
      ]
    },
    {
      "page": "extract_ms_progress",
      "title": "Extract MS progress",
      "topics": [
        "extract_ms_progress"
      ]
    },
    {
      "page": "filter_fft",
      "title": "Filter FFT",
      "topics": [
        "filter_fft"
      ]
    },
    {
      "page": "format_gt",
      "title": "Temp GT function",
      "topics": [
        "format_gt"
      ]
    },
    {
      "page": "generate_ids",
      "title": "Generate IDs",
      "topics": [
        "generate_ids"
      ]
    },
    {
      "page": "generate_pseudochromatograms",
      "title": "Generate pseudochromatograms",
      "topics": [
        "generate_pseudochromatograms"
      ]
    },
    {
      "page": "generate_tables",
      "title": "Generate IDs",
      "topics": [
        "generate_tables"
      ]
    },
    {
      "page": "get_peaks",
      "title": "Get peaks",
      "topics": [
        "get_peaks"
      ]
    },
    {
      "page": "hierarchies_grouped_progress",
      "title": "Hierarchies grouped progress",
      "topics": [
        "hierarchies_grouped_progress"
      ]
    },
    {
      "page": "hierarchies_progress",
      "title": "Hierarchies Progress",
      "topics": [
        "hierarchies_progress"
      ]
    },
    {
      "page": "histograms_progress",
      "title": "Histograms progress",
      "topics": [
        "histograms_progress"
      ]
    },
    {
      "page": "improve_signal",
      "title": "Improve signal",
      "topics": [
        "improve_signal"
      ]
    },
    {
      "page": "improve_signals_progress",
      "title": "Improve signals progress",
      "topics": [
        "improve_signals_progress"
      ]
    },
    {
      "page": "join_peaks",
      "title": "Join peaks",
      "topics": [
        "join_peaks"
      ]
    },
    {
      "page": "keep_best_candidates",
      "title": "Keep best candidates",
      "topics": [
        "keep_best_candidates"
      ]
    },
    {
      "page": "load_annotations",
      "title": "Load annotations",
      "topics": [
        "load_annotations"
      ]
    },
    {
      "page": "load_chromatograms",
      "title": "Load chromatograms",
      "topics": [
        "load_chromatograms"
      ]
    },
    {
      "page": "load_features",
      "title": "Load features",
      "topics": [
        "load_features"
      ]
    },
    {
      "page": "load_features_informed",
      "title": "Load features informed",
      "topics": [
        "load_features_informed"
      ]
    },
    {
      "page": "load_features_not_informed",
      "title": "Load features not informed",
      "topics": [
        "load_features_not_informed"
      ]
    },
    {
      "page": "load_ms_data",
      "title": "Load MS data",
      "topics": [
        "load_ms_data"
      ]
    },
    {
      "page": "load_name",
      "title": "Load name",
      "topics": [
        "load_name"
      ]
    },
    {
      "page": "make_chromatographiable",
      "title": "Make chromatographiable",
      "topics": [
        "make_chromatographiable"
      ]
    },
    {
      "page": "make_confident",
      "title": "Make confident",
      "topics": [
        "make_confident"
      ]
    },
    {
      "page": "make_no_stereo",
      "title": "Make no stereo",
      "topics": [
        "make_no_stereo"
      ]
    },
    {
      "page": "make_other",
      "title": "Make other",
      "topics": [
        "make_other"
      ]
    },
    {
      "page": "middle_pts",
      "title": "Middle pts",
      "topics": [
        "middle_pts"
      ]
    },
    {
      "page": "molinfo",
      "title": "Molinfo",
      "topics": [
        "molinfo"
      ]
    },
    {
      "page": "no_other",
      "title": "No other",
      "topics": [
        "no_other"
      ]
    },
    {
      "page": "normalize_chromato",
      "title": "Normalize chromato",
      "topics": [
        "normalize_chromato"
      ]
    },
    {
      "page": "normalize_chromatograms_list",
      "title": "Normalize chromatograms list",
      "topics": [
        "normalize_chromatograms_list"
      ]
    },
    {
      "page": "p_acn_i",
      "title": "P ACN I",
      "topics": [
        "p_acn_i"
      ]
    },
    {
      "page": "peaks_progress",
      "title": "Peaks progress",
      "topics": [
        "peaks_progress"
      ]
    },
    {
      "page": "plot_chromatogram",
      "title": "Plot chromatogram",
      "topics": [
        "plot_chromatogram"
      ]
    },
    {
      "page": "plot_histograms",
      "title": "Plot histograms",
      "topics": [
        "plot_histograms"
      ]
    },
    {
      "page": "plot_histograms_confident",
      "title": "Plot histograms confident",
      "topics": [
        "plot_histograms_confident"
      ]
    },
    {
      "page": "plot_histograms_litt",
      "title": "Plot histograms litt",
      "topics": [
        "plot_histograms_litt"
      ]
    },
    {
      "page": "plot_histograms_taxo",
      "title": "Plot histograms taxo",
      "topics": [
        "plot_histograms_taxo"
      ]
    },
    {
      "page": "plot_peak_detection",
      "title": "Plot peak detection",
      "topics": [
        "plot_peak_detection"
      ]
    },
    {
      "page": "plot_results_1",
      "title": "Plot results 1",
      "topics": [
        "plot_results_1"
      ]
    },
    {
      "page": "plot_results_2",
      "title": "Plot results 2",
      "topics": [
        "plot_results_2"
      ]
    },
    {
      "page": "plot_tima",
      "title": "Plot TIMA",
      "topics": [
        "plot_tima"
      ]
    },
    {
      "page": "predict_response",
      "title": "Predict response",
      "topics": [
        "predict_response"
      ]
    },
    {
      "page": "prehistograms_progress",
      "title": "Prehistograms progress",
      "topics": [
        "prehistograms_progress"
      ]
    },
    {
      "page": "prepare_comparison",
      "title": "Prepare comparison",
      "topics": [
        "prepare_comparison"
      ]
    },
    {
      "page": "prepare_features",
      "title": "Prepare features",
      "topics": [
        "prepare_features"
      ]
    },
    {
      "page": "prepare_hierarchy",
      "title": "Prepare hierarchy",
      "topics": [
        "prepare_hierarchy"
      ]
    },
    {
      "page": "prepare_mz",
      "title": "Prepare mz",
      "topics": [
        "prepare_mz"
      ]
    },
    {
      "page": "prepare_peaks",
      "title": "Prepare peaks",
      "topics": [
        "prepare_peaks"
      ]
    },
    {
      "page": "prepare_plot",
      "title": "Prepare plot",
      "topics": [
        "prepare_plot"
      ]
    },
    {
      "page": "prepare_plot_2",
      "title": "Prepare plot 2",
      "topics": [
        "prepare_plot_2"
      ]
    },
    {
      "page": "prepare_rt",
      "title": "Prepare rt",
      "topics": [
        "prepare_rt"
      ]
    },
    {
      "page": "prepare_tima_annotations",
      "title": "Prepare TIMA annotations",
      "topics": [
        "prepare_tima_annotations"
      ]
    },
    {
      "page": "preprocess_chromatograms",
      "title": "Preprocess chromatograms",
      "topics": [
        "preprocess_chromatograms"
      ]
    },
    {
      "page": "preprocess_peaks",
      "title": "Preprocess peaks",
      "topics": [
        "preprocess_peaks"
      ]
    },
    {
      "page": "process_compare_peaks",
      "title": "Process compare peaks",
      "topics": [
        "process_compare_peaks"
      ]
    },
    {
      "page": "queries_progress",
      "title": "Queries progress",
      "topics": [
        "queries_progress"
      ]
    },
    {
      "page": "query_wikidata",
      "title": "Query a SPARQL endpoint efficiently",
      "topics": [
        "query_wikidata"
      ]
    },
    {
      "page": "save_histograms_progress",
      "title": "Save histograms progress",
      "topics": [
        "save_histograms_progress"
      ]
    },
    {
      "page": "save_treemaps_progress",
      "title": "Save treemaps progress",
      "topics": [
        "save_treemaps_progress"
      ]
    },
    {
      "page": "second_der",
      "title": "Second der",
      "topics": [
        "second_der"
      ]
    },
    {
      "page": "signal_sharpening",
      "title": "Signal sharpening",
      "topics": [
        "signal_sharpening"
      ]
    },
    {
      "page": "tables_progress",
      "title": "Tables progress",
      "topics": [
        "tables_progress"
      ]
    },
    {
      "page": "taxon_name_to_qid",
      "title": "Taxon name to QID",
      "topics": [
        "taxon_name_to_qid"
      ]
    },
    {
      "page": "transform_ms",
      "title": "Transform MS",
      "topics": [
        "transform_ms"
      ]
    },
    {
      "page": "treemaps_progress",
      "title": "Treemaps progress",
      "topics": [
        "treemaps_progress"
      ]
    },
    {
      "page": "treemaps_progress_no_title",
      "title": "Treemaps progress no title",
      "topics": [
        "treemaps_progress_no_title"
      ]
    },
    {
      "page": "wiki_progress",
      "title": "Wiki progress",
      "topics": [
        "wiki_progress"
      ]
    },
    {
      "page": "y_as_na",
      "title": "Y as NA",
      "topics": [
        "y_as_na"
      ]
    }
  ],
  "_pkglogo": "https://github.com/adafede/cascade/raw/main/man/figures/logo.svg",
  "_readme": "https://github.com/adafede/cascade/raw/main/README.md",
  "_rundeps": [
    "abind",
    "affy",
    "affyio",
    "AnnotationFilter",
    "askpass",
    "base64enc",
    "baseline",
    "BH",
    "bigD",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "biocmake",
    "BiocManager",
    "BiocParallel",
    "bitops",
    "bslib",
    "cachem",
    "caTools",
    "cli",
    "clue",
    "cluster",
    "codetools",
    "commonmark",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "DelayedArray",
    "digest",
    "dir.expiry",
    "doParallel",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "filelock",
    "fontawesome",
    "forcats",
    "foreach",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gt",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "igraph",
    "impute",
    "IRanges",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "juicyjuice",
    "knitr",
    "labeling",
    "lambda.r",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "limma",
    "litedown",
    "magrittr",
    "MALDIquant",
    "markdown",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "MetaboCoreUtils",
    "mime",
    "MsCoreUtils",
    "MSnbase",
    "MultiAssayExperiment",
    "mzID",
    "mzR",
    "ncdf4",
    "openssl",
    "otel",
    "pcaMethods",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "preprocessCore",
    "promises",
    "ProtGenerics",
    "PSMatch",
    "PTMods",
    "purrr",
    "QFeatures",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "reactable",
    "reactR",
    "reshape2",
    "Rhdf5lib",
    "rlang",
    "rmarkdown",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "snow",
    "SparseArray",
    "SparseM",
    "Spectra",
    "statmod",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytable",
    "tima",
    "tinytex",
    "utf8",
    "V8",
    "vctrs",
    "viridisLite",
    "vsn",
    "withr",
    "xfun",
    "XML",
    "xml2",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "cascade.qmd",
      "filename": "cascade.html",
      "title": "General comments about the use of CASCADE",
      "engine": "quarto::html",
      "headings": [],
      "created": "2024-11-04 22:47:41",
      "modified": "2026-05-27 13:49:47",
      "commits": 15
    }
  ],
  "_score": 6.14903426716125,
  "_indexed": true,
  "_nocasepkg": "cascade",
  "_universes": [
    "adafede"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:55:25.000Z",
      "distro": "noble",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "a03938e892f417aa1a40ee33cd2994afd50a83fb3f45ebf98da4a86338a18b01",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:55:37.000Z",
      "distro": "noble",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "3b1ced6f561a2fe364f713de2de1404a4f8c2b0b45afb24e29cb6679ef8cd8d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9002",
      "date": "2026-05-28T15:17:58.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "17c330397c08a583b0f25e5e164b81627e7a98618286656e505af15426b03dba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.0.9002",
      "date": "2026-05-28T15:19:09.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "82a047f7a06c69933d5ee3350950b7b3d6195a132adab950962559e9815de4fc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:55:53.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "650155654ea8b2cb321b0fd1384f4339b1c567e3204d3fa537bc3166d62ff739",
      "status": "success",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:55:21.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "fbf55ef8329ca89fa44ca85c521abc67d53f31cd6ecbedc01d54348369b233e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:57:01.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "d7043f876b0211c1f737383540b362d94509c2f0a54402e7cb4e071bb32b9209",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.0.9002",
      "date": "2026-05-28T14:55:21.000Z",
      "commit": "21c930ef7057f001f9cf235a38d94cfe86645171",
      "fileid": "55e42e1550bd07f12d0108252b4825ca3eab5efae668c809f140af11b0e93ea5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/adafede/actions/runs/26581747187"
    }
  ]
}