MSnbase - Base Functions and Classes for Mass Spectrometry and Proteomics

MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.

Last updated 10 days ago

immunooncologyinfrastructureproteomicsmassspectrometryqualitycontroldataimportbioconductorbioinformaticsmass-spectrometryproteomics-datavisualisation

12.80 score 125 stars 35 packages 712 scripts 5.6k downloads

mzR - parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Last updated 3 days ago

immunooncologyinfrastructuredataimportproteomicsmetabolomicsmassspectrometry

12.62 score 42 stars 43 packages 188 scripts 5.6k downloads

zlibbioc - An R packaged zlib-1.2.5

This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means (most Linux and Mac users should have system-level access to zlib, and no direct need for this package). See the vignette for instructions on use.

Last updated 24 days ago

infrastructurebioconductor-packagecore-package

9.20 score 1.8k packages 17 scripts

tima - Taxonomically Informed Metabolite Annotation

This package provides the infrastructure to perform Taxonomically Informed Metabolite Annotation.

Last updated 20 hours ago

metabolite annotationchemotaxonomyscoring systemnatural productscomputational metabolomicstaxonomic distancespecialized metabolome

6.26 score 9 stars 1 packages 32 scripts

GenomeInfoDbData - Species and taxonomy ID look up tables used by GenomeInfoDb

Files for mapping between NCBI taxonomy ID and species. Used by functions in the GenomeInfoDb package.

Last updated 2 months ago

annotationdataorganism

5.82 score 2 stars 1.7k packages 33 scripts

cascade - Contextualizing untargeted Annotation with Semi-quantitative Charged Aerosol Detection for pertinent characterization of natural Extracts

This package provides the infrastructure to perform Automated Composition Assessment of Natural Extracts.

Last updated 20 hours ago

metabolite annotationcharged aerosol detectorsemi-quantitativenatural productscomputational metabolomicsspecialized metabolome

5.25 score 2 stars 63 scripts

SpectraToQueries - Spectra to queries

SpectraToQueries provides the infrastructure to translate spectra to queries.

Last updated 1 days ago

knowledge extractionspectral informationquerying system

2.90 score